Adamo M., Comtet-Marre S., Büttner E., Kellner H., Luis P., Vallon L., Prego R., Hofrichter M., Girlanda M., Peyret P., & Marmeisse R. (2022). Fungal dye-decolorizing peroxidase diversity: roles in either intra- or extracellular processes. Applied Microbiololgy & Biotechnology (2022). https://doi.org/10.1007/s00253-022-11923-0
Aguirre-Guataqui, K., Márquez-Torres, M., Pineda-Castañeda, H. M., Vargas-Casanova, Y., Ceballos-Garzon, A., Rivera-Monroy, Z. J., García-Castañeda, J. E., & Parra-Giraldo, C. M. (2022). Chimeric Peptides Derived from Bovine Lactoferricin and Buforin II : Antifungal Activity against Reference Strains and Clinical Isolates of Candida spp. Antibiotics, 11(11), 1561. https://doi.org/10.3390/antibiotics11111561
Bibbal D., Ruiz P., Sapountzis P., Mazuy-Cruchaudet C., Loukiadis E., Auvray F., Forano E., & Brugère H. (2022). Persistent Circulation of Enterohemorrhagic Escherichia coli (EHEC) O157:H7 in Cattle Farms : Characterization of Enterohemorrhagic Escherichia coli O157:H7 Strains and Fecal Microbial Communities of Bovine Shedders and Non-shedders. Frontiers in Veterinary Science, 9, 852475. https://doi.org/10.3389/fvets.2022.852475
Borges, F., Briandet, R., Callon, C., Champomier-Vergès, M.-C., Christieans, S., Chuzeville, S., Denis, C., Desmasures, N., Desmonts, M.-H., Feurer, C., Leroi, F., Leroy, S., Mounier, J., Passerini, D., Pilet, M.-F., Schlusselhuber, M., Stahl, V., Strub, C., Talon, R., & Zagorec, M. (2022). Contribution of omics to biopreservation : Toward food microbiome engineering. Frontiers in Microbiology, 13, 951182. https://doi.org/10.3389/fmicb.2022.951182
Bravo-Chaucanés, C. P., Vargas-Casanova, Y., Chitiva-Chitiva, L. C., Ceballos-Garzon, A., Modesti-Costa, G., & Parra-Giraldo, C. M. (2022). Evaluation of Anti-Candida Potential of Piper nigrum Extract in Inhibiting Growth, Yeast-Hyphal Transition, Virulent Enzymes, and Biofilm Formation. Journal of Fungi, 8(8), 784. https://doi.org/10.3390/jof8080784
Ceballos-Garzon, A., Muñoz, A. B., Plata, J. D., Sanchez-Quitian, Z. A., & Ramos-Vivas, J. (2022). Phages, anti-CRISPR proteins, and drug-resistant bacteria : What do we know about this triad? Pathogens and Disease, ftac039. https://doi.org/10.1093/femspd/ftac039
Chakoory, O., Comtet-Marre, S., & Peyret, P. (2022). RiboTaxa : Combined approaches for rRNA genes taxonomic resolution down to the species level from metagenomics data revealing novelties. NAR Genomics and Bioinformatics, 4(3), lqac070. https://doi.org/10.1093/nargab/lqac070
Chafsey I., Ostrowski R., Guilbaud M., Teixeira P., Herry J.-M., Caccia N., Chambon C., Hébraud M., Azeredo J., Bellon-Fontaine M.-N., Popowska M., & Desvaux M. (2022). Deep impact of the inactivation of the SecA2-only protein export pathway on the proteosurfaceome of Listeria monocytogenes. Journal of Proteomics, 250, 104388. https://doi.org/10.1016/j.jprot.2021.104388
Chaucheyras-Durand F., Sacy A., Karges K., Apper E. (2022). Gastro-intestinal microbiota in equines and its role in health and disease: The black box opens. Microorganisms (10) 2517. https://doi.org/10.3390/microorganisms10122517
Deschamps C., Denis S., Humbert D., Zentek J., Priymenko N., Apper E., & Blanquet-Diot S. (2022). In vitro models of the canine digestive tract as an alternative to in vivo assays : Advances and current challenges. ALTEX. https://doi.org/10.14573/altex.2109011
Deschamps, C., Humbert, D., Zentek, J., Denis, S., Priymenko, N., Apper, E., & Blanquet-Diot, S. 2022. From Chihuahua to Saint-Bernard: how did digestion and microbiota evolve with dog sizes. International Journal of Biological Sciences, 18(13), 5086-5102. https://www.ijbs.com/v18p5086.htm
Douadi C., Vazeille E., Chambon C., Hébraud M., Fargeas M., Dodel M., Coban D., Pereira B., Birer A., Sauvanet P., Buisson A., & Barnich N. (2022). Anti-TNF agents restrict adherent-invasive Escherichia coli replication within macrophages through modulation of chitinase 3-like 1 in patients with Crohn’s disease. Journal of Crohn’s and Colitis, jjab236. https://doi.org/10.1093/ecco-jcc/jjab236
Dunière L., Renaud J. B., Steele M. A., Achard C. S., Forano E., & Chaucheyras-Durand F. (2022). A live yeast supplementation to gestating ewes improves bioactive molecule composition in colostrum with no impact on its bacterial composition and beneficially affects immune status of the offspring. Journal of Nutritional Science, 1‑18. https://doi.org/10.1017/jns.2022.3
Félix, B., Sevellec, Y., Palma, F., Douarre, P.E., Felten, A., Radomski, N., Mallet, L., Blanchard, Y., Leroux, A., Soumet, C., Bridier, A., Piveteau, P., Ascensio, E., Hébraud, M., Karpíšková, R., Gelbíčová, T., Torresi, M., Pomilio, F., Cammà, C., Di Pasquale, A., Skjerdal, T., Pietzka, A., Ruppitsch, W., Ricão Canelhas, M., Papić, M., Hurtado, A., Wullings, B., Bulawova, H., Castro, H., Lindström, M., Korkeala, H., Šteingolde, Z., Kramarenko, T., Cabanova, L., Szymczak, B., Gareis, M., Oswaldi, V., Marti, E., Seyfarth, A.M., Leblanc, J.C., Guillier, L., Roussel, S. 2022. A European-wide dataset to uncover adaptive traits of Listeria monocytogenes to diverse ecological niches. Sci Data 9, 190. https://doi.org/10.1038/s41597-022-01278-6
Fournier, E., Denis, S., Dominicis, A., Van de Wiele, T., Alric, M., Mercier-Bonin, M., Etienne-Mesmin, L., & Blanquet-Diot, S. (2022). A child is not an adult : Development of a new in vitro model of the toddler colon. Applied Microbiology and Biotechnology. https://doi.org/10.1007/s00253-022-12199-0
Fournier, E., Etienne-Mesmin, L., Blanquet-Diot, S., & Mercier-Bonin, M. (2022). Microplastiques dans notre alimentation : Un focus sur la santé intestinale. Cahiers de Nutrition et de Diététique, 57(4), 270‑283. https://doi.org/10.1016/j.cnd.2022.03.001
Fournier, E., Leveque, M., Ruiz, P., Ratel, J., Durif, C., Chalancon, S., Amiard, F., Edely, M., Bezirard, V., Gaultier, E., Lamas, B., Houdeau, E., Lagarde, F., Engel, E., Etienne-Mesmin, L., Blanquet-Diot, S., & Mercier-Bonin, M. (2022). Microplastics : What happens in the human digestive tract? First evidences in adults using in vitro gut models. Journal of Hazardous Materials, 442, 130010. https://doi.org/10.1016/j.jhazmat.2022.130010
Fournier E, Roussel C, Dominicis A, Ley D, Peyron M-A, Collado V, Mercier-Bonin M, Lacroix F, Alric M, Van de Wiele T, Chassard C, Etienne-Mesmin L, Blanquet-Diot S. (2022). In vitro models of gut digestion across childhood: current developments, challenges and future trends. Biotechnology Advances, 54, 107796. DOI:10.1016/j.biotechadv.2021.107796.
Graindorge, S., Villette, C., Koechler, S., Groh, C., Comtet-Marre, S., Mercier, P., Magerand, R., Peyret, P., Heintz, D., Schaller, H., & Arsène-Ploetze, F. (2022). The Arabidopsis thaliana–Streptomyces Interaction Is Controlled by the Metabolic Status of the Holobiont. International Journal of Molecular Sciences, 23(21), 12952. https://doi.org/10.3390/ijms232112952
Lavoignat, M., Denis, S., Faye, A., Halupka, L., Perrochon, S., Rhazi, L., Giraudeau, P., Déjean, S., Branlard, G., Bancel, E., & Ravel, C. (2022). Differences in bread protein digestibility traced to wheat cultivar traits. Journal of Cereal Science, 107, 103533. https://doi.org/10.1016/j.jcs.2022.103533
Moreira de Gouveia, M. I., Daniel, J., Garrivier, A., Bernalier-Donadille, A., & Jubelin, G. (2022). Diversity of ethanolamine utilization by human commensal Escherichia coli. Research in Microbiology, 103989. https://doi.org/10.1016/j.resmic.2022.103989
Popova, M., Fakih, I., Forano, E., Siegel, A., Muñoz-Tamayo, R., Morgavi, D. (2022). Rumen microbial genomics: from cells to genes (and back to cells). CAB Reviews Perspectives in Agriculture Veterinary Science Nutrition and Natural Resources. https://doi.org/10.1079/cabireviews202217025
Rocha Martin, V. N., Del’Homme, C., Chassard, C., Schwab, C., Braegger, C., Bernalier-Donadille, A., & Lacroix, C. (2022). A proof of concept infant-microbiota associated rat model for studying the role of gut microbiota and alleviation potential of Cutibacterium avidum in infant colic. Frontiers in Nutrition, 9, 902159. https://doi.org/10.3389/fnut.2022.902159
Saint Martin C., Darsonval M., Grégoire M., Caccia N., Midoux L., Berland S., Leroy S., Dubois-Brissonnet F., Desvaux M., & Briandet R. (2022). Spatial organisation of Listeria monocytogenes and Escherichia coli O157:H7 cultivated in gel matrices. Food Microbiology, 103, 103965. https://doi.org/10.1016/j.fm.2021.103965
Saint Martin C, Jubelin G, Darsonval M, Leroy S, Leneveu-Jenvrin C, Hmidene G, Omhover L, Stahl V, Guillier L, Briandet R, Desvaux M, Dubois-Brissonnet F. 2022. Genetic, physiological, and cellular heterogeneities of bacterial pathogens in food matrices: Consequences for food safety. Comprehensive Reviews in Food Science and Food Safety, Wiley, 2022. https://doi.org/10.1111/1541-4337.13020
Sauvaitre T, Van Herreweghen F, Delbaere K, Durif C, Van Landuyt J, Fadhlaoui K, Huille S, Chaucheyras-Durand F, Etienne-Mesmin L, Blanquet-Diot S., Van de Wiele T. (2022). Lentils and Yeast Fibers: A New Strategy to Mitigate Enterotoxigenic Escherichia coli (ETEC) Strain H10407 Virulence?. Nutrients 2022, 14, 2146. https:// doi.org/10.3390/nu14102146
Sauvaitre, T., Van Landuyt, J., Durif, C., Roussel, C., Sivignon, A., Chalancon, S., Uriot, O., Van Herreweghen, F., Van de Wiele, T., Etienne-Mesmin, L., & Blanquet-Diot, S. (2022). Role of mucus-bacteria interactions in Enterotoxigenic Escherichia coli (ETEC) H10407 virulence and interplay with human microbiome. Npj Biofilms and Microbiomes, 8(1), 86. https://doi.org/10.1038/s41522-022-00344-6
Suriyaprom S., Mosoni P., Leroy S., Kaewkod T., Desvaux M., & Tragoolpua Y. (2022). Antioxidants of Fruit Extracts as Antimicrobial Agents against Pathogenic Bacteria. Antioxidants, 11(3), 602. https://doi.org/10.3390/antiox11030602
Teseo, S., Otani, S., Brinch, C., Leroy, S., Ruiz, P., Desvaux, M., Forano, E., Aarestrup, F. M., & Sapountzis, P. (2022). A global phylogenomic and metabolic reconstruction of the large intestine bacterial community of domesticated cattle. Microbiome, 10(1), 155. https://doi.org/10.1186/s40168-022-01357-1
Vo JL, Ortiz GCM, Totsika M, Lo AW, Hancock SJ, Whitten AE, Hor L, Peters KM, Ageorges V, Caccia N, Desvaux M, Schembri MA, Paxman JJ, Heras B. 2022; Variation of Antigen 43 self-association modulates bacterial compacting within aggregates and biofilms. NPJ Biofilms Microbiomes. 2022 Apr 8;8(1):20. doi: 10.1038/s41522-022-00284-1
Zhukova, M., Sapountzis, P., Schiøtt, M., & Boomsma, J. J. (2022). Phylogenomic analysis and metabolic role reconstruction of mutualistic Rhizobiales hindgut symbionts of Acromyrmex leaf-cutting ants. FEMS Microbiology Ecology, 98(9), fiac084. https://doi.org/10.1093/femsec/fiac084
