Allario T, Tixier A, Awad H, Lemaire C, Brunel N, Badel E, Barigah TS, Julien JL, Peyret P, Mellerowicz EJ, Cochard H and Herbette S. 2018. PtxtPME1 and homogalacturonans influence xylem hydraulic properties in poplar. Physiologia Plantarum 163 (4) : 502-515. DOI : 10.1111/ppl.12702
Bach A, Guasch I, Elcoso G, Chaucheyras-Durand F, Castex M, Fabregas F, Garcia-Fruitos E and Aris A. 2018. Changes in gene expression in the rumen and colon epithelia during the dry period through lactation of dairy cows and effects of live yeast supplementation. Journal of Dairy Science 101 (3) : 2631-2640. DOI : 10.3168/jds.2017-13212
Batut B, Gravouil K, Defois C, Hiltemann S, Brugere JF, Peyretaillade E and Peyret P. 2018. ASaiM: a Galaxy-based framework to analyze microbiota data. Gigascience 7 (6) : 1-7. DOI : 10.1093/gigascience/giy057
Bertin Y, Segura A, Jubelin G, Duniere L, Durand A and Forano E. 2018. Aspartate metabolism is involved in the maintenance of enterohaemorrhagic Escherichia coli O157:H7 in bovine intestinal content. Environmental Microbiology 20 (12) : 4473-4485. DOI : 10.1111/1462-2920.14380
Bingula R, Filaire M, Radosevic-Robin N, Berthon JY, Bernalier-Donadille A, Vasson MP, Thivat E, Kwiatkowski F and Filaire E. 2018. Characterisation of gut, lung, and upper airways microbiota in patients with non-small cell lung carcinoma: Study protocol for case-control observational trial. Medicine (Baltimore) 97 (50) : e13676. DOI : 10.1097/MD.0000000000013676
Bohbot JM, Darai E, Bretelle F, Brami G, Daniel C and Cardot JM. 2018. Efficacy and safety of vaginally administered lyophilized Lactobacillus crispatus IP 174178 in the prevention of bacterial vaginosis recurrence. Journal of Gynecology Obstetrics and Human Reproduction 47 (2) : 81-86. DOI : 10.1016/j.jogoh.2017.11.005
Bohbot JM, Darai E, Bretelle F, Brami G, Daniel C and Cardot JM. 2018. Erratum to: "Efficacy and safety of vaginally administered lyophilized Lactobacillus crispatus IP 174178 in the prevention of bacterial vaginosis recurrence" [J. Gynecol. Obstet. Hum. Reprod. 47 (2018) 81-7]. Journal of Gynecology Obstetrics and Human Reproduction 47 (4): 177. DOI : 10.1016/j.jogoh.2018.03.005
Brugere J-F, Ben Hania W, Arnal M-E, Ribiere C, Ballet N, Vandeckerkove P, Ollivier B and O'toole PW. 2018. Archaea: Microbial candidates in next-generation probiotics development. Journal of clinical gastroenterology 52 Suppl 1, Proceedings from the 9th Probiotics, Prebiotics and New Foods, Nutraceuticals and Botanicals for Nutrition & Human and Microbiota Health Meeting, held in Rome, Italy from September 10 to 12, 2017: S71-S73. DOI : 10.1097/MCG.0000000000001043
Cardot JM, Garcia-Arieta A, Paixao P, Tasevska I and Davit B. 2018. Implementing the additional strength biowaiver for generics: EMA recommended approaches and challenges for a US-FDA submission. European Journal of Pharmaceutical Sciences 111 : 399-408. DOI : 10.1016/j.ejps.2017.10.013
Cardot JM, Lukas JC and Muniz P. 2018. Time scaling for in vitro-in vivo correlation: the inverse release function (IRF) approach. Aaps Journal 20 (6) : 95. DOI : 10.1208/s12248-018-0250-5
Cariou M, Ribiere C, Morliere S, Gauthier JP, Simon JC, Peyret P and Charlat S. 2018. Comparing 16S rDNA amplicon sequencing and hybridization capture for pea aphid microbiota diversity analysis. BMC Res Notes 11 (1) : 461. DOI : 10.1186/s13104-018-3559-3
Comtet-Marre S, Chaucheyras-Durand F, Bouzid O, Mosoni P, Bayat AR, Peyret P and Forano E. 2018. Fibrochip, a functional DNA microarray to monitor cellulolytic and hemicellulolytic activities of rumen microbiota. Frontiers in Microbiology 9 : 215. DOI : 10.3389/fmicb.2018.00215
Correia S, Hebraud M, Poeta P, Capelo JL and Igrejas G. 2018. How combined multicomparative proteomic approaches can improve the understanding of quinolone resistance in Salmonella Typhimurium. Future Microbiology 13 (4) : 403-406. DOI : 10.2217/fmb-2017-0250
Crouzet L, Derrien M, Cherbuy C, Plancade S, Foulon M, Chalin B, Vlieg J, Grompone G, Rigottier-Gois L and Serror P. 2018. Lactobacillus paracasei CNCM I-3689 reduces vancomycin-resistant Enterococcus persistence and promotes Bacteroidetes resilience in the gut following antibiotic challenge. Scientific Reports 8 (1) : 5098. DOI : 10.1038/s41598-018-23437-9
Dausset C, Patrier S, Gajer P, Thoral C, Lenglet Y, Cardot JM, Judlin P, Ravel J and Nivoliez A. 2018. Comparative phase I randomized open-label pilot clinical trial of Gynophilus(A (R)) (Lcr regenerans(A (R))) immediate release capsules versus slow release muco-adhesive tablets. European Journal of Clinical Microbiology & Infectious Diseases 37 (10) : 1869-1880. DOI : 10.1007/s10096-018-3321-8
Defois C, Ratel J, Garrait G, Denis S, Le Goff O, Talvas J, Mosoni P, Engel E and Peyret P. 2018. Food chemicals disrupt human gut microbiota activity and impact intestinal homeostasis as revealed by in vitro systems. Scientific Reports 8 (1) : 11006. DOI : 10.1038/s41598-018-29376-9
Desvaux M, Candela T and Serror P. 2018. Surfaceome and proteosurfaceome in parietal monoderm bacteria: Focus on protein cell-surface display. Frontiers in Microbiology 9 : 100. DOI : 10.3389/fmicb.2018.00100
Duale C, Cardot JM, Joanny F, Trzeciakiewicz A, Martin E, Pickering G and Dubray C. 2018. An advanced formulation of a magnesium dietary supplement adapted for a long-term use supplementation improves magnesium bioavailability: in vitro and clinical comparative studies. Biol Trace Elem Res 186 (1) : 1-8. DOI : 10.1007/s12011-018-1277-2
Esbelin J, Santos T and Hebraud M. 2018. Desiccation: An environmental and food industry stress that bacteria commonly face. Food Microbiol 69 : 82-88. DOI : 10.1016/j.fm.2017.07.017
Esbelin J, Santos T, Ribiere C, Desvaux M, Viala D, Chambon C and Hebraud M. 2018. Comparison of three methods for cell surface proteome extraction of Listeria monocytogenes biofilms. OMICS 22 (12) : 779-787. DOI : 10.1089/omi.2018.0144
Etienne-Mesmin L, Chassaing B, Adekunle O, Mattei LM, Bushman FD and Gewirtz AT. 2018. Toxin-positive Clostridium difficile latently infect mouse colonies and protect against highly pathogenic C. difficile. Gut 67 (5) : 860-871. DOI : 10.1136/gutjnl-2016-313510
Evrard B, Bonnet B, Jubelin G and Bernalier-Donadille A. 2018. Probiotics and Allergy. Revue Francaise D'Allergologie 58 (3) : 185-187. DOI :
Gasc C and Peyret P. 2018. Hybridization capture reveals microbial diversity missed using current profiling methods. Microbiome 6 (1) : 61. DOI : 10.1186/s40168-018-0442-3
Gauthier P, Cardot JM, Beyssac E and Aiache JM. 2018. Study of the influence of coating methods on lipid spheres manufactured on rotor fluidized bed process. Pharmaceutical Development and Technology 23 (6) : 655-662. DOI : 10.1080/10837450.2017.1356331
Gruning B, Dale R, Sjodin A, Chapman BA, Rowe J, Tomkins-Tinch CH, Valieris R, Koster J and Team TB. 2018. Bioconda: sustainable and comprehensive software distribution for the life sciences. Nature Methods 15 (7) : 475-476. DOI : 10.1038/s41592-018-0046-7
Huws SA, Creevey CJ, Oyama LB, Mizrahi I, Denman SE, Popova M, Munoz-Tamayo R, Forano E, Waters SM, Hess M, Tapio I, Smidt H, Krizsan SJ, Yanez-Ruiz DR, Belanche A, Guan L, Gruninger RJ, Mcallister TA, Newbold CJ, Roehe R, Dewhurst RJ, Snelling TJ, Watson M, Suen G, Hart EH, Kingston-Smith AH, Scollan ND, Prado RM, Pilau EJ, Mantovani HC, Attwood GT, Edwards JE, Mcewan NR, Morrisson S, Mayorga OL, Elliott C and Morgavi DP. 2018. Addressing global ruminant agricultural challenges through understanding the rumen microbiome: past, present, and future. Frontiers in Microbiology 9 : 2161. DOI : 10.3389/fmicb.2018.02161
Igrejas G, Correia S, Silva V, Hebraud M, Canica M, Torres C, Gomes C, Nogueira F and Poeta P. 2018. Planning a one health case study to evaluate methicillin resistant Staphylococcus aureus and its economic burden in Portugal. Frontiers in Microbiology 9 : 2964. DOI : 10.3389/fmicb.2018.02964
Jaeger N, Besaury L, Rohling AN, Koch F, Delort AM, Gasc C, Greule M, Kolb S, Nadalig T, Peyret P, Vuilleumier S, Amato P, Bringel F and Keppler F. 2018. Chloromethane formation and degradation in the fern phyllosphere. Science of the Total Environment 634 : 1278-1287. DOI : 10.1016/j.scitotenv.2018.03.316
Jubelin G, Desvaux M, Schuller S, Etienne-Mesmin L, Muniesa M and Blanquet-Diot S. 2018. Modulation of enterohaemorrhagic Escherichia coli survival and virulence in the human gastrointestinal tract. Microorganisms 6 (4) : E115. DOI : 10.3390/microorganisms6040115
Leroy F, Aymerich T, Champomier-Verges MC, Cocolin L, De Vuyst L, Flores M, Leroi F, Leroy S, Talon R, Vogel RF and Zagorec M. 2018. Fermented meats (and the symptomatic case of the Flemish food pyramid): Are we heading towards the vilification of a valuable food group? International Journal of Food Microbiology 274 : 67-70. DOI : 10.1016/j.ijfoodmicro.2018.02.006
Mcallister TA, Duniere L, Drouin P, Xu S, Wang Y, Munns K and Zaheer R. 2018. Silage review: Using molecular approaches to define the microbial ecology of silage. Journal of Dairy Science 101 (5) : 4060-4074. DOI : 10.3168/jds.2017-13704
Meneguin AB, Beyssac E, Garrait G, Hsein H and Cury BSF. 2018. Retrograded starch/pectin coated gellan gum-microparticles for oral administration of insulin: A technological platform for protection against enzymatic degradation and improvement of intestinal permeability. European Journal of Pharmaceutics and Biopharmaceutics 123 : 84-94. DOI : 10.1016/j.ejpb.2017.11.012
Monteiro R, Chafsey I, Leroy S, Chambon C, Hebraud M, Livrelli V, Pizza M, Pezzicoli A and Desvaux M. 2018. Differential biotin labelling of the cell envelope proteins in lipopolysaccharidic diderm bacteria: Exploring the proteosurfaceome of Escherichia coli using sulfo-NHS-SS-biotin and sulfo-NHS-PEG4-bismannose-SS-biotin. Journal of proteomics 181 : 16-23. DOI : 10.1016/j.jprot.2018.03.026
Pickering G, Macian N, Delage N, Picard P, Cardot JM, Sickout-Arondo S, Giron F, Duale C, Pereira B and Marcaillou F. 2018. Milnacipran poorly modulates pain in patients suffering from fibromyalgia: a randomized double-blind controlled study. Drug Design Development and Therapy 12 : 2485-2496. DOI : 10.2147/dddt.s162810
Polakof S, Remond D, Bernalier-Donadille A, Rambeau M, Pujos-Guillot E, Comte B, Dardevet D and Savary-Auzeloux I. 2018. Metabolic adaptations to HFHS overfeeding: how whole body and tissues postprandial metabolic flexibility adapt in Yucatan mini-pigs. European Journal of Nutrition 57 (1) : 119-135. DOI : 10.1007/s00394-016-1302-1
Ras G, Bailly X, Chacornac JP, Zuliani V, Derkx P, Seibert TM, Talon R and Leroy S. 2018. Contribution of nitric oxide synthase from coagulase-negative staphylococci to the development of red myoglobin derivatives. International Journal of Food Microbiology 266 : 310-316. DOI : 10.1016/j.ijfoodmicro.2017.11.005
Ras G, Leroy S and Talon R. 2018. Nitric oxide synthase: What is its potential role in the physiology of staphylococci in meat products? International journal of food microbiology 282 : 28-34. DOI : 10.1016/j.ijfoodmicro.2018.06.002
Rojas-Lopez M, Monterio R, Pizza M, Desvaux M and Rosini R. 2018. Intestinal Pathogenic Escherichia coli: Insights for vaccine development. Frontiers in Microbiology 9 : 440. DOI : 10.3389/fmicb.2018.00440
Rojas-Lopez M, Zorgani MA, Kelley LA, Bailly X, Kajava AV, Henderson IR, Polticelli F, Pizza M, Rosini R and Desvaux M. 2018. Identification of the Autochaperone domain in the type Va secretion system (T5aSS): Prevalent feature of autotransporters with a beta-helical passenger. Frontiers in Microbiology 8 : 2607. DOI : 10.3389/fmicb.2017.02607
Roussel C, Galia W, Leriche F, Chalancon S, Denis S, Van De Wiele T and Blanquet-Diot S. 2018. Comparison of conventional plating, PMA-qPCR, and flow cytometry for the determination of viable enterotoxigenic Escherichia coli along a gastrointestinal in vitro model. Applied Microbiology and Biotechnology 102 (22) : 9793-9802. DOI : 10.1007/s00253-018-9380-z
Roussel C, Sivignon A, De Vallee A, Garrait G, Denis S, Tsilia V, Ballet N, Vandekerckove P, Van De Wiele T, Barnich N and Blanquet-Diot S. 2018. Anti-infectious properties of the probiotic Saccharomyces cerevisiae CNCM I-3856 on enterotoxigenic E. coli (ETEC) strain H10407. Applied microbiology and biotechnology 102 (14) : 6175-6189. DOI : 10.1007/s00253-018-9053-y
Samtlebe M, Denis S, Chalancon S, Atamer Z, Wagner N, Neve H, Franz C, Schmidt H, Blanquet-Diot S and Hinrichs J. 2018. Bacteriophages as modulator for the human gut microbiota: Release from dairy food systems and survival in a dynamic human gastrointestinal model. Lwt-Food Science and Technology 91 : 235-241. DOI : 10.1016/j.lwt.2018.01.033
Santos T, Theron L, Chambon C, Viala D, Centeno D, Esbelin J and Hebraud M. 2018. MALDI mass spectrometry imaging and in situ microproteomics of Listeria monocytogenes biofilms. Journal of Proteomics 187 : 152-160. DOI : 10.1016/j.jprot.2018.07.012
Segura A, Auffret P, Bibbal D, Bertoni M, Durand A, Jubelin G, Kerouredan M, Brugere H, Bertin Y and Forano E. 2018. Factors involved in the persistence of a shiga toxin-producing Escherichia coli O157:H7 strain in bovine feces and gastro-intestinal content. Frontiers in Microbiology 9 : 375. DOI : 10.3389/fmicb.2018.00375
Segura A, Bertoni M, Auffret P, Klopp C, Bouchez O, Genthon C, Durand A, Bertin Y and Forano E. 2018. Transcriptomic analysis reveals specific metabolic pathways of enterohemorrhagic Escherichia coli O157:H7 in bovine digestive contents. Bmc Genomics 19 (1) : 766. DOI : 10.1186/s12864-018-5167-y
Szopinska JW, Gresse R, Van Der Marel S, Boekhorst J, Lukovac S, Van Swam I, Franke B, Timmerman H, Belzer C and Arias Vasquez A. 2018. Reliability of a participant-friendly fecal collection method for microbiome analyses: a step towards large sample size investigation. BMC Microbiol 18 (1) : 110. DOI : 10.1186/s12866-018-1249-x
Tomic I, Mueller-Zsigmondy M, Vidis-Millward A and Cardot JM. 2018. In vivo release of peptide-loaded PLGA microspheres assessed through deconvolution coupled with mechanistic approach. European Journal of Pharmaceutics and Biopharmaceutics 125 : 21-27. DOI : 10.1016/j.ejpb.2017.12.007
