PUBLICATIONS

Boudon, A., Kwiatkowski, D., Niderkorn, V., Forano, E., Nozière, P., Silberberg, M. (2025). Oral-stomach sampling to replace rumen-fistulated animals in ruminant nutrition research - a case study. bioRxiv 2025.01.17.633359

De Sousa, T., Machado, S., Caniça, M., Ramos, M. J. N., Santos, D., Ribeiro, M., Hébraud, M., Igrejas, G., Alves, O., Costa, E., Silva, A., Lopes, R., & Poeta, P. (2025). Pseudomonas aeruginosa : One Health approach to deciphering hidden relationships in Northern Portugal. Journal of Applied Microbiology, lxaf037.

De Sousa, T., Silva, C., Igrejas, G., Hébraud, M., & Poeta, P. (2025). The Interactive Dynamics of Pseudomonas aeruginosa in Global Ecology. Journal of Basic Microbiology, e70004.

De Sousa, T., Wang, H.Y., Lin, T.W., Caniça, M., Ramos, M., Santos. D., Silva, C., Saraiva, S., Beyrouthy, R., Bonnet, R., Hébraud, M., Igrejas, G., Poeta, P. (2025). Mutational Analysis of Colistin-Resistant Pseudomonas aeruginosa Isolates: From Genomic Background to Antibiotic Resistance . Pathogens, 2025, 14 (4), pp.387

Esmail, G. A., Uriot, O., Mottawea, W., Denis, S., Sultan, S., Njoku, E. N., Chiba, M., Tosh, S., Blanquet-Diot, S., & Hammami, R. (2025). Western diet-based NutriCol medium : A high-pectin, low-inulin culture medium promoted gut microbiota stability and diversity in PolyFermS and M-ARCOL continuous in vitro models. Food Research International, 206, 115993.

Fakih, A., Ratel, J., Tsoureki, D., Mercier, F., Kondjoyan, N., Caccia, N.,  Botta, C., Rantsiou, K., Engel, E. (2025). How to sample Listeria monocytogenes culture for volatolomics by headspace extraction-gas chromatography-Q Exactive Orbitrap mass spectrometry?. Food Research International, 2025, 208, pp.116043.

Gresse, R., Cappellozza, B.I.; Macheboeuf, D., Torrent, A., Danon, J., Capern, L., Sandvang, D., Niderkorn, V., Copani, G., Forano, E. (2025). In vitro investigation of the effects of Bacillus subtilis-810B and Bacillus licheniformis-809A on the rumen fermentation and microbiota. Animals 2025, 15, 476

Kavanaugh, D. W., Sivignon, A., Rossez, Y., Chouit, Z., Chambon, C., Béal, L., Bonnet, M., Hébraud, M., Guérardel, Y., Nguyen, H. T. T., & Barnich, N. (2025). Biochemical characterization of the Escherichia coli surfaceome : A focus on type I fimbriae and flagella. Frontiers in Microbiology, 16, 1507286.

Martin, L., Philippe, R., Sabine, L., & Panagiotis, S. (2025). Escobase and AcR : Escherichia coli databases of genomes and acid resistance genes from isolates from cattle farms.

Otani, S., Jespersen, M.L., Brinch, C., Møller, F.D., Pilgaard, B., Jensen, E.E.B., Leekitcharoenphon, P., Svendsen, A.C., Aarestrup, A.H., Sonda, T., Sylvina, T.J., Leach, J., Piel, A., Stewart, F., Sapountzis, P., Kazyoba, P.E., Kumburu, H. (2025).  Genomic and functional co-diversification imprint African Hominidae microbiomes to signal dietary and lifestyle adaptations. Gut Microbes, 17(1). 

Uriot, O., Defois-Fraysse, C., Couturier, I., Deschamps, C., Durif, C., Chaudemanche, C., Dreux-Zigha, A., & Blanquet-Diot, S. (2025). Effects of prebiotics from diverse sources on dysbiotic gut microbiota associated to western diet : Insights from the human Mucosal ARtificial COLon (M-ARCOL). Current Research in Food Science, 10, 100968.